Ignacio del Valle's repositories
2020_iPS_Lung_Differentiation
Reproducibility repo accompanying Chaido Ori, Meshal Ansari, Ilias Angelidis, Fabian J. Theis, Herbert B. Schiller and Micha Drukker "Single cell trajectory mapping of human pluripotent stem cells differentiating towards lung and hepatocyte progenitors".
2020_scWorkshop
Code and data repository for the 2020 physalia course on single cell RNA sequencing.
Adrenal
Code for adrenal paper
adv_scrnaseq_2020
Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
awesome-deep-learning
A curated list of awesome Deep Learning tutorials, projects and communities.
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
bds-files
Supplementary files for my book, "Bioinformatics Data Skills"
CodeClub
Repository for all things IHI CodeClub
COMUNET
COMUNET: a tool to explore and visualize intercellular communication
Data-Science--Cheat-Sheet
Cheat Sheets
genomics-in-the-cloud
Source code and related materials for the O'Reilly book
In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
myrepo
Testing setup
pwc
Papers with code. Sorted by stars. Updated weekly.
scRNAseq_analysis_vignette
Tutorial for scRNA-seq data analysis beginners using R
tidyseurat
Seurat meets tidyverse. The best of both worlds.
tinyatlas
A tiny cell atlas for commonly sequenced organisms.