idc9

RobustMeanEstimator

Robust mean estimation (in python) using M-estimators in one or multi dimension.

hdmedians

High-dimensional medians (medoid, geometric median, etc.). Fast implementations in Python.

Self-Supervised-ViT-Path

Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)

glmmPen

glmmPen package

wilds

A machine learning benchmark of in-the-wild distribution shifts, with data loaders, evaluators, and default models.

labml

🔎 Monitor deep learning model training and hardware usage from your mobile phone 📱

pathml

Tools for computational pathology

AI-FFPE

Deep Learning-based Frozen Section to FFPE Translation

athena

Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets

pytorch-lightning

Pretrain, finetune and deploy AI models on multiple GPUs, TPUs with zero code changes.

TOAD

AI-based pathology predicts origins for cancers of unknown primary - Nature

scikit-survival

Survival analysis built on top of scikit-learn

HIA

Histopathology Image Analysis

ray

Ray is a unified framework for scaling AI and Python applications. Ray consists of a core distributed runtime and a set of AI Libraries for accelerating ML workloads.

VAMPIRE_open

open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition

tableone

Create "Table 1" for research papers in Python

metric-learn

Metric learning algorithms in Python

histocartography

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

pymanopt

Python toolbox for optimization on Riemannian manifolds with support for automatic differentiation

pylops

PyLops – A Linear-Operator Library for Python

example_package

envelopeR

shared-subspace

OrganizationFiles

abess

Fast Best-Subset Selection Library

pyprox

Proximal algorithms made easy in Python

The-Art-of-Linear-Algebra

Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"

Merlion

Merlion: A Machine Learning Framework for Time Series Intelligence

GGMncv

GGMs with nonconvex penalties

proxmin

Proximal optimization in pure python