icebert

pblat

parallelized blat with multi-threads support

docker_ucsc_genome_browser

UCSC Genome Browser Docker Image

libsvm_cuda

GPU accelerated libSVM grid search

pblat-cluster

blat with cluster parallel hybrid computing support

ChIPpipes

Pipelines for ChIP-seq / CUT&RUN / CUT&Tag etc. analysis

eccDNA_RCA_nanopore

eccDNA identification from nanopore long reads of rolling-circle amplicon

docker_ucsc_genome_browser_db

UCSC Genome Browser MySQL Database Docker Image

kubernetes-in-docker

Using docker containers to compose a local multi-node kubernetes cluster with docker in docker

Jobs

A lightweight single-node Batch Job Queue

biocommons.seqrepo

non-redundant, compressed, journalled, file-based storage for biological sequences

bioconda-recipes

Conda recipes for the bioconda channel.

CAGEr

fork of https://bioconductor.org/packages/CAGEr/

CharGer

Characterization of Germline variants

ChIP-STARR-seq

clinvar_norm

dbc

an efficient and stable opensource DBMS

deepTools

Tools to process and analyze deep sequencing data.

e1071_parallel

Parallelized svm cross-validation in e1071 R package

easyC

An end to end HiC processing pipeline from raw sequencing reads to contact metrics

hgvs

Python library to parse, format, validate, normalize, and map sequence variants

libsvm_cv_parallel

Extend the libSVM with parallelized svm cross-validation

rstudio_server_docker

Rstudio server in docker

SNPsplit

Allele-specific alignment sorting

spp

SPP - R package for analysis of ChIP-seq and other functional sequencing data