icbi-lab / NeoFuse

NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.

icbi-lab/NeoFuse Issues

asking about the pattern of HLA.txt file for running multiple sample
Closed 3 months ago2
The results were very different from GRCH37 and GRCH38.
Closed 5 months ago3
IndexError in final_out.py When Processing TPM Values
Updated 5 months ago1
Questions with STAR index buliding
Closed 9 months ago8
An error occured while appending TPM values to the final output files
Closed 2 years ago2
Question about premature stop codon of fusion transcript
Closed 2 years ago4
Error with NeoFuse execution
Closed 2 years ago2
YARA temp directory issue
Closed 2 years ago12
Multiple sample mode Error featureCounts, problem with samtools sort output
Closed 3 years ago7
Docker image fails to build
Closed 3 years ago1
downloading reference
Closed 3 years ago4
Should I exclude the low quality bases and adapter sequences from fastq files?
Closed 3 years ago2
Does the result change between single samples and multiple samples?
Closed 3 years ago2
Adding Arriba "-k" and "-f" options to NeoFuse command line option list
Closed 4 years ago2
Add breakpoint columns in final output
Closed 4 years ago1
Add read coverage
Updated 4 years ago
Error occured during OptiType run
Closed 4 years ago12
Docker run unknown shorthand flag: 'r' in -rm
Closed 4 years ago8