For more information about the score-client please visit the ICGC DCC Docs page.
Run the script build.sh to build image locally.
bash ./build.sh
Run the script rbuild.sh to build image remotely.
bash ./rbuild.sh
You will need to edit the script above to match your account on SyLabs.io.
If you have the client installed and cannot build the image locally nor remotely, simply run
singularity pull library://icaoberg/default/score-client:3.0.1
The command above will download the image from the SyLabs.io image repository.
If you read the documentation you will find the following basic example
bin/score-client url --object-id ddcdd044-adda-5f09-8849-27d6038f8ccd
When using the container the command above turns into
singularity run --app score /path/to/score-client_3.0.1.sif url --object-id ddcdd044-adda-5f09-8849-27d6038f8ccd
Use the comand above as a emplate when working with your scripts.
I am nothing but a humble programmer creating the container for this wonderful app.
Copyleft © 2019-2020 icaoberg at the Computational Biology Department in Carnegie Mellon University