Institute for Bioinformatics and Evolutionary Studies

Institute for Bioinformatics and Evolutionary Studies's repositories

ARC

Assembly by Reduced Complexity (ARC)

Language:PythonApache-2.041 14 57

seqyclean

Language:C++MIT26 6 4

Seed

R/Shiny application for viewing microbial community data

Language:R19 7 49

GRC_Scripts

Executable R and Python scripts for the Genomics Resources Core

Language:RArtistic-2.07 14 4

SAD-BCB501-Spring2018

Analysis of various datasets for the Sequence Analysis Discussion group.

4 60

HTStream

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes

Language:C++Apache-2.03 10

clearcut

This is clearcut, the reference implementation for the Relaxed Neighbor Joining algorithm.

Language:CNOASSERTION2 60

grcScripts2

University of Idaho Genomics Resources Core HTS Processing scripts as an R package

Language:RApache-2.02 90

APER

Analyzing Positional Error in Reads

Language:ShellApache-2.01 100

hitsapipe

High Throughput Sequence Analysis Pipeline

Language:Python1 3 9

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Language:CNOASSERTION1 30

Roche454QAReport

R package to produce a Quality Assurance Report for Roche 454 data

Language:R1 30

arGENt

Language:RApache-2.00100

dbcHelpers

Helper tools for pre and post dbcAmplicon runs.

Language:Python030

evalyn

EVALYN - A evolutionary computation approach to evolving high-quality guide trees and multiple sequence alignments.

Language:C060

grcScriptsPy

Genomics Resources Core Python Bioinformatic Scripts

Language:PythonApache-2.0000

HTStream-validation

Validation and figures for HTStream

030

ibest.github.com

030

MetAmp

Language:R05 5

slopmap

Language:C++050