Ian Fore's repositories
bio-model-discovery
The aim of this project is to discover the data model of a biological study. The data model reflects the design of the study and is driven by the scientists who create the study. Many systems accommodate this by allowing users to specify the attributes/observations or data elements recorded in the study. It is often not clear which of these attributes are observations and which represent the factors/dimensions of the study.
cohort-rep-hackathon
Project tracking for GA4GH Computable Cohort Representation Hackathons
data-connect-trino
Cloned from https://github.com/DNAstack/ga4gh-search-adapter-presto
data-repository-service-schemas
A repository for the schemas used for the Data Repository Service.
dbgap
dbGaP to biocaddie conversion utilities
DbGaP-FHIR-API-Docs
The documentation repository for the dbGaP FHIR API.
drs-compliance-suite
Tests to verify the compliance of a DRS implementation with GA4GH DRS specification
FASPclient
Scripts and clients for GA4GH Federated Analysis Systems Project
FHIR-CAT-June22
Technical interop pilot using RNASeq data
ga4gh-search
A framework for building search-based applications on biomedical data
galaxy-hub
Galaxy Community Hub
gsid
The Global Specimen Identifier (GSID) Service is a NCI Enterprise Service. Global Specimen Identifer (GSID) is defined as the entity that contains a Globally Unique Idenitifer (UUID) and associated attributes that consists of a name value pair. A UUID is defined as a 16 byte identifier that is intended to be globally unique. There are 3 x 10^38 unique identifiers that can be obtained through the service.
pypfb
Python library & CLI to create, view and edit PFB files
sddp-bigquery
Working with dbGap SDDP data in big query
staruml-xmi
XMI Import and Export for StarUML
tmt-catissue
Reporting and analysis of caTissue test scripts and results.