Belen Walker's repositories
UPhyloplot2
Draw phylogenetic trees of tumor evolution
Python
最良心的 Python 教程：
advanced_programming
advanced programming
systemPipeRdata
NGS workflow templates and sample data
shiny-upsetr
An interactive Shiny App for UpSet plots.
ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
self-assembling-manifold
The Self-Assembling-Manifold (SAM) algorithm.
cellxgene
An interactive explorer for single-cell transcriptomics data
pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
scTyper
scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
systemPipeR
Project Website:
loompy
Python implementation of the Loom file format - http://loompy.org
REDItools
REDItools are python scripts to investigate RNA editing at genomic scale.
bget
Portable command-line tool to query bioinformatics APIs, data, databases and files.
snpeffToMaf
Converts snpeff annotations into MAF
scCancer
A package for automated processing of single cell RNA-seq data in cancer
dyno
Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
deepcell-tf
Deep Learning Library for Single Cell Analysis
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
DoubletDetection
Doublet detection in single-cell RNA-seq data.
SCDC
SCDC
stereoscope
Spatial mapping of cell types by integration of transcriptomics data
leoatchina-datasci
基于rstudio、code-server、jupyter-lab的dockerfile，用于快速搭建数据分析环境。
bisque
An R toolkit for estimation of cell composition from bulk expression data
SEQprocess
SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media