BIFO's repositories
Corona_Variant_Scoring
Method to score circulating SARS-CoV-2 lineages on their potential antigenicity
Broker4Microbiota
Django App for collection and storage of sequencing orders for the sequencing facility
corona_lineage_dynamics
SDPlots scripts for the coverage server
phylogeny-of-single-cells
snakemake workflow for the phylogenetic reconstruction of single cell lineages from multiple displacement amplified single cell DNAseq
fastml
A copy of https://github.com/AidanDelaney/fastml with errors fixed
covid-germany-mcmc
SARS-CoV-2 lineage importations and spread are reduced after nonpharmaceutical interventions in phylogeographic analyses
taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun metagenomic data
corona_protein_dynamics
Mutation dynamics analysis of SARS-Cov-2 S-protein based on phylogenetics and statistics
RiboDetector
Accurate and rapid RiboRNA sequences Detector based on deep learning
covid-germany-mcmc-phylogeo-tools
A phylogeo-tools for covid-germany-mcmc
epitope-prediction-paper
Data and results for the EpitopeVec paper
hcv-mds
Neutralization maps for HCV data
lotus
Scripts related to the Lotus japonicus root microbiota manuscript Zgadzaj, Garrido-Oter et al., 2016
scelestial-paper-materials-devel
The lineage tree reconstruction method based on Steiner tree problem - dataset and test scripts for the paper (development version)
Haploflow_supplementary
Helper scripts and other supplementary material for Haploflow
snakemake-workflow-univec-removal
A small Snakemake workflow to remove contaminating vector sequences from raw sequencing data using UniVec.
which_tree
Testing of phylogenetic inference methods