hzauleibowen's repositories
scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
awesome-mac
Now we have become very big, Different from the original idea. Collect premium software in various categories.
brook
A cross-platform programmable network tool. 一个跨平台可编程网络工具.
create_cisTarget_databases
Create cisTarget databases
cutTag-pipeline
Pipeline for Cut&Tag analysis
dictys
Context specific and dynamic gene regulatory network reconstruction and analysis
ggh4x
ggplot extension: options for tailored facets, multiple colourscales and miscellaneous
HiC_tools
A collection of tools for Hi-C data analysis
higlass-server
Server component for HiGlass that manages and serves tiled data
kkndme_tianya
天涯 kkndme 神贴聊房价
polyfun
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
PyWGCNA
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
rMVP
:postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
rna-seq
Transcription analysis
scrnapip
A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
scScalpChromatin
很全面的单细胞图谱代码
selene
a framework for training sequence-level deep learning networks
susieR
R package for "sum of single effects" regression.
TEProf2Paper
TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
tfboot
R package for bootstrapping motifbreakR results
TOSICA
Transformer for One-Stop Interpretable Cell-type Annotation