hybridLambda's repositories
hybrid-Lambda
Hybrid-Lambda is a software package that can simulate gene trees within a rooted species network or a rooted species tree under the Kingman's coalescent or Lambda coalescent process.
hybrid-coal
Hybrid-coal is used to compute gene tree probabilities given species network under coalescent process. We use a new representation of the species network likelihood that expresses the probability distribution of the gene tree topolgies as a linear combination of gene tree distributions given a set of species trees.