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PRIME

BROW

STU-Net

The largest pre-trained medical image segmentation model (1.4B parameters) based on the largest public dataset (>100k annotations) to date.

MIU-VL

This is a repository for the ICLR2023 accepted paper -- Medical Image Understanding with Pretrained Vision Language Models: A Comprehensive Study.

CITE

[MICCAI'23] Text-guided Foundation Model Adaptation for Pathological Image Classification

XrayPULSE

DeblurringMIM

PathoDuet

PULSE

PULSE: Pretrained and Unified Language Service Engine

.github

MIS-FM

USFM

MedFM

Official Repository of NeurIPS 2023 - MedFM Challenge

MedLSAM

MedLSAM: Localize and Segment Anything Model for 3D Medical Images

pytorch-cifar100

Practice on cifar100(ResNet, DenseNet, VGG, GoogleNet, InceptionV3, InceptionV4, Inception-ResNetv2, Xception, Resnet In Resnet, ResNext,ShuffleNet, ShuffleNetv2, MobileNet, MobileNetv2, SqueezeNet, NasNet, Residual Attention Network, SENet, WideResNet)

Probabilistic-Unet-Pytorch

A Probabilistic U-Net for segmentation of ambiguous images implemented in PyTorch

DCNv2

Deformable Convolutional Networks v2 with Pytorch

dgl

Python package built to ease deep learning on graph, on top of existing DL frameworks.

neusomatic

NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

torchnet

Torch on steroids

pytorch-faster-rcnn

pytorch1.0 updated. Support cpu test and demo. (Use detectron2, it's a masterpiece)

AIStartups

Startups about artificial intelligence. (DM, ML, NLP, CV...)

A-Collection-of-important-tasks-in-pytorch

Everyday things people use in Pytorch. No need to spend hours reading Pytorch forums trying to find them!

tensorpack

A Neural Net Training Interface on TensorFlow, with focus on speed + flexibility

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

boxx

Tool-box for efficient build and debug in Python. Especially for Scientific Computing and Computer Vision.

opencv

Open Source Computer Vision Library

dla

Code for the CVPR 2018 Oral Paper "Deep Layer Aggregation"

convNet.pytorch

ConvNet training using pytorch