hust-linyi / LENAS

This is the official code of the paper "LENAS: Learning-based Neural Architecture Search and Ensemble for 3D Radiotherapy Dose Prediction"

LENAS: Learning-based Neural Architecture Search and Ensemble for 3D Radiotherapy Dose Prediction

This is the official code for our paper:

LENAS: Learning-based Neural Architecture Search and Ensemble for 3D Radiotherapy Dose Prediction
Yi Lin*, Yanfei Liu*, Hao Chen, Xin Yang, Kai Ma, Yefeng Zheng, Kwang-Ting Cheng

Highlights

• A learning-based ensemble framework, named LENAS, including the U-NAS framework which efficiently and automatically searches for optimal architectures, and a KDA-Net for the trade-off between the computational cost and accuracy.
• First place in the AIMIS challenge.

Usage

Requirement

pip install -r requirements.txt

Data preparation

• OpenKBP
• AIMIS

Training & Evaluation

U-NAS

1. Prepare the data and modify the data path in config.yml.

cd /path_to_your_RTDosePrediction/RTDosePrediction/DataPrepare
python prepare_OpenKBP_C3D.py

2. Search the architecture.

python Main.py

KDA-Net

1. Training script (Take U-Net as an example).

cd /path_to_your_RTDosePrediction/RTDosePrediction/Unet
python train.py --batch_size 4 --list_GPU_ids 1 0 --max_iter 80000

2. Inference script.

cd /path_to_your_RTDosePrediction/RTDosePrediction/Unet
python test.py --GPU_id 0

• The prediction results are stored in /path_to_your_RTDosePrediction/RTDosePrediction/Output/unet/Prediction.

Details

Utils

• DataPrepare
• DataLoader
• DataAugmentation
• NetworkTrainer
• Evaluate

Pre-Trained

• Teachers: The pre-trained models used as teacher networks. XXX.pkl and XXX_geno.pkl are the weights and structures, respectively.

Models

• Single Model:
  • Unet
  • Unet_CBAM
  • Vnet
  • FCN
  • DCNN(2D)
• Cascade Models:
  • C3D
  • C3D_spacing (Resample the data in the data preparation stage)
  • ResC3D
  • ResC3D_CBAM
• NAS Manual Model:
  • Manual_1-Manual_6 (See Appendix)
• NAS Single Model:
  • NAS_18-NAS_42 (See Appendix)
• KD Models:
  • KD

For each MAS Single Model, the best_genotype.pkl file is obtained by manually modifying the geno.py file and running it.

Citation

Please cite the paper if you use the code.

TO BE ADDED