hussius

deeplearning-biology

A list of deep learning implementations in biology

tabnet_fork

A fork of TabNet by Google Research

ascii-autoencoder

TensorFlow autoencoder implementation with ASCII visualization of reconstruction progress

bigpicture-twitterdiscourse

Companion repository to blog post "The big picture of public discourse" where we analyze Swedish Twitter data from 2015

TCGA_proteomics_tutorial

Tutorial on working with TCGA mass-spec proteomics (and RNA-seq) data.

valdata

Analysis of voting patterns in the Swedish general election 2014.

shiny-imageclassif-tfslim

Shiny version of code in blog post https://www.r-bloggers.com/image-classification-in-r-using-trained-tensorflow-models/

meetup-lime-examples

Notebooks with examples of using LIME on tabular, text and image data, presented at Machine Learning Stockholm 2017-09-27

scanBAM

Script that searches a set of BAM files for RNA-seq alignments that match a provided set of peptide coordinates.

gene-expression-prediction

Case study for data carpentry class on predicting differential gene expression based on genomic features

lstm_sandbox

Testing LSTM architectures with Valohai

swedish-school-fires

Data on Swedish school fire cases 1998-2014

bioFreelancers

Freelance bioinformaticians directory

bra_scraper

butterfly

Code for paper "Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly" by M Celorio-Mancera et al., (2016) BMC Evolutionary Biology 16:59. doi: 10.1186/s12862-016-0627-y

courses

Course homepages for some of the courses given at SciLifeLab

curiouscrows

Team repository for the Curious Crows for Hack4Sweden 2016

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

flair

A very simple framework for state-of-the-art Natural Language Processing (NLP)

gff-phastcons-human

Scripts for obtaining max and mean PhastCons46way for a GFF of human genomic coordinates

gff-phylocsf-human

Script for scoring entries in a GFF file for coding potential using PhyloCSF score files

ml-id-lab3

proteogenomics_python

python scripts for proteogenomics analysis

python-sample-vscode-flask-tutorial

Sample code for the Flask tutorial in the VS Code documentation

SRUG190123

Code samples from Explainable ML in R talk at Stockholm R useR group 190123

StackedDAE

Stacked Denoising AutoEncoder based on TensorFlow

stockholm-ai

Stockholm AI's website

streamlit-example

Example Streamlit app that you can fork to test out share.streamlit.io

swedishlearning

A repo to record my Swedish learning stuff, most are short texts i write with my vocabulary which is growing slowly. Please feel free to PR as long as you find errors or other expressions. Tack.

VIMER

视觉预训练基础模型仓库