Qing Zhang's repositories
uncertainties
AM207 project: dissect aleatoric and epistemic uncertainty
hurrialice.github.io
A minimalist Jekyll theme for running a personal blog
efficientR
Efficient R programming: a book
lendingClub
Machine learning practices: Should a loan be accepted? Check this:
bai-indexer
Build an index for your BAM Index (BAI)
Canopy
Python package canopy loads the SomaLogic, Inc. proprietary data file called an *.adat. The package provides auxiliary functions for extracting relevant information from the ADAT object once in the Python environment. Basic familiarity with the Python environment is assumed, as is the ability to install contributed packages from the Python Package Installer (pip)
CApy
Cancer Analysis tools in Python
dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
getzlab-LNP
Log-normal-Poisson regression model from Hess et al. 2019
getzlab-SignatureAnalyzer
Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.
igv_remote
A Python interface for interacting with IGV desktop over a port using IGV batch commands
SCANVIS
SCANVIS - a toolkit for SCoring, ANnotating and VISualizing splice junctions
SingleCellOpenProblems
Formalizing and benchmarking open problems in single-cell genomics
what
Pytorch implementation of "What Uncertainties Do We Need in Bayesian Deep Learning for Computer Vision?"