Hugues Fontenelle's repositories
RandomWalk
Computes an image where a given pixel is the probability of belonging to the same label as the seed provided by the user.
spliceAnnotator
annotating splice sites with MaxEntScan
2015-11-18-AMG-Research-Seminar
iPythonNotebook accompanying the presentation held in Strømstad on November 18th, 2015
2015-12-02-Oslo
SWC workshop Oslo, 2-3 dec 2015
bioinfotools
Collection of scripts for bioinformatics
diabetic-retinopathy-code
Code for the Kaggle competition http://www.kaggle.com/c/diabetic-retinopathy-detection
edX
Course materials for the edX Data Analysis for Genomics
emacs-starter-kit
Because the Emacs defaults are not so great sometimes.
FeatureEdgeDetector
An image edge detector with a twist.
nf-tower
Nextflow Tower platform
shell-novice
Software Carpentry introduction to the shell for novices.
SOAP3-dp
To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously.
training-course
Instructor training course