huangyh09

brie

BRIE: Bayesian Regression for Isoform Estimate in Single Cells

brie-tutorials

Tutorials for using BRIE

PTM-X

PTM-X: a prediction tool for Post-Translational Modification cross-talk

hilearn

A small library of machine learning methods and data visualization plots

briekit

Preprocessing tool kit of BRIE project in splicing analysis

diceseq

Dynamic Isoform spliCing Estimator via sequencing data

pyseqlib

A small python library to process sequencing data.

ViralScan

STARsolo-ViralScan: Scan viral transcripts from single-cell RNA-seq data with STARsolo

MSclerosisSrc

Analysis scripts and notebooks for Multiple Sclerosis project

bioinfo-demo

Bioinformatics demo resources

bisctree

cnv-inference

research project on single-cell dissection of medulloblastoma (brain cancer in children)

codingnotes

Notes for programming and systems management

doubletQC

Quality check of doublet detection methods in single-cell RNA-seq data

foundation-data-science

Repo for an HKU course: STAT1005 Foundation of Data Science

glmpca-py

generalized principal component analysis (GLM-PCA) implemented in python

huangyh09.github.io

limix

Linear mixed model for genomic analyses.

limix-plot

Plotting library for genetics.

nnwrapper

Some utilities and wrappers for Neural Network Models

PASTRI

scMC

Bayesian inference of mutation correlation structure in single-cells.

scQTLib

single-cell quantitative trait (locus) analysis library

SingleCell-Workshop-2021

slalom

Spanki

Splicing analysis toolkit for RNA-SEQ

TensorFlow-Bayes

Examples of TensorFlow for Bayesian inference

vireo-manual

XClone

Detection of allele-specific subclonal copy number variations from single-cell transcriptomic data.

xcltk

Toolkit for XClone (warning: under development, not stable)