huangtinglin

ChatGLM-6B

ChatGLM-6B: An Open Bilingual Dialogue Language Model | 开源双语对话语言模型

ChatGLM2-6B

ChatGLM2-6B: An Open Bilingual Chat LLM | 开源双语对话语言模型

CodeGeeX

CodeGeeX: An Open Multilingual Code Generation Model (KDD 2023)

GLM-130B

GLM-130B: An Open Bilingual Pre-Trained Model (ICLR 2023)

CogVLM

a state-of-the-art-level open visual language model | 多模态预训练模型

VisualGLM-6B

Chinese and English multimodal conversational language model | 多模态中英双语对话语言模型

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

graphein

Protein Graph Library

ProteinMPNN

Code for the ProteinMPNN paper

evo

Biological foundation modeling from molecular to genome scale

RoseTTAFold-All-Atom

Uni-Fold

An open-source platform for developing protein models beyond AlphaFold.

torchmd-net

Training neural network potentials

RoseTTAFold2NA

RoseTTAFold2 protein/nucleic acid complex prediction

atom3d

ATOM3D: tasks on molecules in three dimensions

se3-transformer-pytorch

Implementation of SE3-Transformers for Equivariant Self-Attention, in Pytorch. This specific repository is geared towards integration with eventual Alphafold2 replication.

equiformer-pytorch

Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding

DockQ

DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models

equiformer

[ICLR 2023 Spotlight] Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphs

gvp

Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure

DSMBind

DIPS-Plus

The Enhanced Database of Interacting Protein Structures for Interface Prediction

Rex-Ying-Thesis

Rex Ying's Ph.D. Thesis, Stanford University

D4Explainer

Official Implementation of "D4Explainer: In-Distribution GNN Explanations via Discrete Denoising Diffusion"

BatchSampler

The source code for BatchSampler that accepted in KDD'23

MolGroup

Learning to Group Auxiliary Datasets for Molecule, NeurIPS2023

avstyle

Codebase for the Paper: Learning Visual Styles from Audio-Visual Associations (ECCV 2022, in PyTorch)

Graph-and-Geometric-Learning.github.io

cpsc483-583-website-23fall

MolGroup

Learning to Group Auxiliary Datasets for Molecule, NeurIPS2023