huangsunan's repositories
OlinkRPackage
Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.
SCP
SCP provides a comprehensive set of tools for single cell data processing and downstream analysis.
ecotyper
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
IReNA
R package IReNA
scPLC
Codes for the scPLC project
shap
A game theoretic approach to explain the output of any machine learning model.
MCB185-2021
Bioinformatics Programming
museumst
Museum of Spatial Transcriptomics
seurat
R toolkit for single cell genomics
Machine-Learning
:zap:机器学习实战（Python3）：kNN、决策树、贝叶斯、逻辑回归、SVM、线性回归、树回归
handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
ML-NLP
此项目是机器学习(Machine Learning)、深度学习(Deep Learning)、NLP面试中常考到的知识点和代码实现，也是作为一个算法工程师必会的理论基础知识。
pumpkin-book
《机器学习》（西瓜书）公式推导解析，在线阅读地址：https://datawhalechina.github.io/pumpkin-book
scATAC-pro
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
pixy
Software for painlessly estimating average nucleotide diversity within and between populations
7z2hashcat
extract information from password-protected .7z archives (and .sfx files) such that you can crack these "hashes" with hashcat
DeepLearning
Python for《Deep Learning》，该书为《深度学习》(花书) 数学推导、原理剖析与源码级别代码实现
Gerapy
Distributed Crawler Management Framework Based on Scrapy, Scrapyd, Django and Vue.js
herblabel
Making RTF labels for Herbarium Specimens based on Darwin Core Templates
MrModeltest2
C program for selecting DNA substitution models using PAUP*
jvarkit
Java utilities for Bioinformatics
PGA
Plastid Genome Annotator
ASTRAL
Accurate Species TRee ALgorithm
GetOrganelle
Get organelle genomes from genome skimming data
pdf2word
批量PDF转化为Word
seq-scripts
scripts for sequence and feature conversion, annotation, analysis ...