Neng Huang (huangnengCSU)

huangnengCSU

Geek Repo

Company:Dana Farber Cancer Institute & Harvard Medical School

Location:Boston

Twitter:@csuhuangneng

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Neng Huang's repositories

compleasm

A genome completeness evaluation tool based on miniprot

Language:PythonLicense:Apache-2.0Stargazers:166Issues:5Issues:32

longcallR

LongcallR is a small variant caller for single molecule long-read RNA-seq data

Language:RustLicense:MITStargazers:40Issues:3Issues:1

NanoSNP

A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.

Language:PythonLicense:MITStargazers:19Issues:2Issues:2

BlockPolish

BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer

Language:PythonLicense:MITStargazers:17Issues:1Issues:3

NeuralPolish

NeuralPolish: a novel Nanopore polishing method based on alignment matrix construction and orthogonal Bi-GRU Networks.

Language:PythonLicense:MITStargazers:8Issues:1Issues:2

BPFGM

BlockPolish feature generation module (BPFGM) is used to divide the draft assembly into blocks from reads-to-assembly alignment and generate feature matrices used for predicting consensus sequence.

Language:C++License:MITStargazers:1Issues:1Issues:4

d2l-zh

《动手学深度学习》:面向中文读者、能运行、可讨论。中英文版被55个国家的300所大学用于教学。

Language:PythonLicense:Apache-2.0Stargazers:1Issues:0Issues:0

bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellLicense:MITStargazers:0Issues:0Issues:0

MarginPolish

MarginPolish: Graph based assembly polishing

Language:CLicense:MITStargazers:0Issues:0Issues:0

sublimetext-licensekey

LiCENSE KEY FOR ALL SUBLIME TEXT VERSiON

Stargazers:0Issues:0Issues:0

tsai

Time series Timeseries Deep Learning Machine Learning Pytorch fastai | State-of-the-art Deep Learning library for Time Series and Sequences in Pytorch / fastai

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:0Issues:0Issues:0