Beast code in Giters

huangl07's starred repositories

gatk4-pathseq

This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.

Language:wdlBSD-3-Clause1000

corehunter3

Core Hunter 3: a flexible core subset selection tool

Language:JavaApache-2.0600

CRISPResso2

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

Language:PythonNOASSERTION25900

GeneFuse

Gene fusion detection and visualization

Language:CMIT11400

Clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Language:Python22900

princess

Language:PythonMIT7900

veryfasttree

Efficient phylogenetic tree inference for massive taxonomic datasets

Language:C++NOASSERTION9600

verkko

Language:Python27200

CPM-KG

Language:Python5100

stablediffusion

High-Resolution Image Synthesis with Latent Diffusion Models

Language:PythonMIT3769500

dadi-cli

Automated and distributed population genetic model inference from allele frequency spectra

Language:PythonApache-2.01300

EVidenceModeler

source code for EVM

Language:PerlBSD-3-Clause9800

GQS

Language:Python200

PhyNetPy

A python library for the simulation, analysis, and inference of phylogenetic networks

Language:PythonMIT200

PhyloNet

Language:Roff1600

raredisease

Call and score variants from WGS/WES of rare disease patients.

Language:NextflowMIT7500

CRISPRme

Language:PythonNOASSERTION1600

go-ontology

Source ontology files for the Gene Ontology

Language:MakefileCC-BY-4.021600

paper2gui

Convert AI papers to GUI，Make it easy and convenient for everyone to use artificial intelligence technology。让每个人都简单方便的使用前沿人工智能技术

Language:Jupyter NotebookMIT1003500

spQSP-omics-2021

model code for spQSP omics (Zhang et al. 2021)

Language:C++100

gggenomes

A grammar of graphics for comparative genomics

Language:RNOASSERTION57200

Loter

A software package for local ancestry inference and haplotype phasing

Language:C++NOASSERTION3700

BamDeal

BamDeal: a comprehensive toolkit for bam manipulation

Language:C++MIT1200

pharokka

fast phage annotation program

Language:PythonMIT13900

interproscan

Genome-scale protein function classification

Language:JavaApache-2.028200

IIIVmrMLM

The R tool associated with 3VmrMLM, a comprehensive GWAS method for identifying QTNs, QTN-by-environment interactions, and QTN-by-QTN interactions for quantitative traits.

2700

SOAPnuke

A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files

Language:C++GPL-3.09700

scRNA.seq.course

Analysis of single cell RNA-seq data course

Language:TeXGPL-3.010800

Winnowmap

Long read / genome alignment software

Language:CNOASSERTION23300

kmersGWAS

A library for running k-mers based GWAS

Language:C++GPL-3.09900