huangl07

gamma_smc

EviAnn_release

This is the standalone version of the EviAnn pipeline

scarHRD

biotools

A list of useful bioinformatics resources

CharGer

Characterization of Germline variants

genomes-catalogue-pipeline

MGnify genome analysis pipeline

mutation-attention

CnnCrispr

A deep learning method for sgRNA off-target propensity prediction.

HeidiLischer-refguideddenovoassembly_pipelines-30a99561c9fc

refguideddenovoassembly_pipelines

hrDetect

Workflow for the sigtools and HRdetect R packages

diCal2

diCal2 infers complex demographic histories from whole-genome sequencing data

ArchaicSeeker2.0

ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest version of this series, ArchaicSeeker 2.0, has the following three notable improvements compared with the original version of this software. First, it can automatically determine the boundary of each introgressed sequence. Next, it is capable of tracing both known and unknown ancestral sources of a given introgressed sequence. Finally, it has the ability to reconstruct the introgression history with more sophisticated introgression models.

MINOTAUR

Multivariate vIsualisatioN and OuTlier Analysis Using R

kage

Alignment-free genotyper for SNPs and short indels, implemented in Python.

networkGWAS

Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype of interest.

Med-ChatGLM

Repo for Chinese Medical ChatGLM 基于中文医学知识的ChatGLM指令微调

Huatuo-Llama-Med-Chinese

Repo for BenTsao [original name: HuaTuo (华驼)], Instruction-tuning Large Language Models with Chinese Medical Knowledge. 本草（原名：华驼）模型仓库，基于中文医学知识的大语言模型指令微调

MEGAnE

MEGAnE

AC-ICAM-NM

Code related to the 2023 AC-ICAM manuscript in Nature Medicine.

digitaltwins

SUMMIT

Summary-level Unified Method for Modeling Integrated Transcriptome

introme

Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation

HiPhase

Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

TWAS-pipeline

TWAS-pipeline

echolocatoR

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

GeorgiScripts

PhylogicNDT

polyGembler

cactus

Official home of genome aligner based upon notion of Cactus graphs