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NexToU

NexToU: Efficient Topology-Aware U-Net for Medical Image Segmentation

Airway

Automatic classification of tertiary bronchi based on bronchus masks using a rule-based approach.

MEDIA_CDARL

Official repository for "C-DARL: Contrastive diffusion adversarial representation learning for label-free blood vessel segmentation"

Retinal-Blood-Vessel-Segmentation-by-Active-Contour

In this project, I implement an enhanced active contour method that uses discrete wavelet transform for energy minimization to increase the accuracy.

HeuristicCLLabeling

MICCAI_Public

MICCAI ARCADE Challenge.

SAM4MIS

SAM & SAM 2 for for Medical Image Segmentation: Open-Source Project Summary

AbdomenAtlas

[NeurIPS 2023] AbdomenAtlas 1.0 (5,195 CT volumes + 9 annotated classes)

SwinMM

[MICCAI 2023] This repository includes the official implementation our paper "SwinMM: Masked Multi-view with Swin Transformers for 3D Medical Image Segmentation"

Awesome-Foundation-Models-in-Medical-Imaging

A curated list of foundation models for vision and language tasks in medical imaging

DeePRAC_project

Learning anatomical digital twins in pediatric 3D imaging for renal cancer surgery. A project of LTCI-Télécom Paris (IPP), LIP6-Sorbonne Université, IMAG2-Necker hospital-Imagine and Philips Research France. PhD project of Giammarco La Barbera

DeepCADRADS

CAD-RADS scoring of coronary CT angiography with Multi-Axis Vision Transformer: a clinically-inspired deep learning pipeline

DeepTICI

Deep learning-based automated TICI (Thrombolysis In Cerebral Infarction) scoring for DSA-based assessment of mechanical thrombolysis response.

pulmonary-tree-repairing

[MICCAI'23] Topology Repairing of Disconnected Pulmonary Airways and Vessels: Baselines and a Dataset

medpseg

MEDPSeg: Official implementation of Modified EfficientDet for Pulmonary Polymorphic Segmentation

Connectivity-Aware-Airway-Segmentaion

[IEEE JBHI 2024] Towards Connectivity-Aware Pulmonary Airway Segmentation

imed_vision

VesselGrapher

VesselGrapher: Learning Dynamic Vessel Graph Representations for Segmentation (MICCAI2023 CROWN challenge)

UT-BTNet

Coronary Vessel Segmentation in Coronary Angiography with a Multi-Scale U-Shape Transformer Incorporating Boundary Aggregation and Topology Preservation

vessel_simulator

A toolbox for vessel X-ray angiography images simulation.

UGS-Net

MICCAI 2022 Uncertainty-Guided Lung Nodule Segmentation with Feature-Aware Attention

LUNA16-Lung-Nodule-Analysis-2016-Challenge

LUNA16-Lung-Nodule-Analysis-2016-Challenge

LungNoduleSegmentation

This is a project which utilizing LIDC-IDRI open dataset to train both detection and segmentation models

Lung-Nodule-Segmentation-Framework

included model train、test、validation、evaluation etc

MICCAI2023-TopoLab-Labels

The labels for the open-source dataset used in the paper "Topology-Preserving Automatic Labeling of Coronary Arteries via Anatomy-aware Connection Classifier"

Pulmonary-Vessel-Segmentation-and-Artery-vein-Separation

The code of paper "Transformer-based 3D U-Net for Pulmonary Vessel Segmentation and Artery-vein Separation from CT images"

AneurysmSeg

Code of "AASeg: Artery-aware Global and Local Framework for Aneurysm Segmentation in Head and Neck CTA Images"

Ori_Net

Data preprocessing for CCTA

DFS-PDS-Network-for-3D-coronary-artery-segmentation

PVA-CAS

The source code of "Partial Vessels Annotation-based Coronary Artery Segmentation with Self-training and Prototype Learning".