htgp

Awesome-Bio-Foundation-Models

A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.

tracktor

Python and OpenCV based object tracking software

viroprofiler

A containerized bioinformatics pipeline for viral metagenomic data analysis

HiFi-16S-workflow

Nextflow pipeline to analyze PacBio HiFi full-length 16S data

Novel

📚 Novle setting | 小说书源及软件整理 爱阅书香 / 阅读 / 香色闺阁

VirSorter2

customizable pipeline to identify viral sequences from (meta)genomic data

2021-iScience-Phageome

Companion scripts used for exploring the phageome

ePCR_multiplex

download-refseq-genomes

Perl script to download genomes within a clade from NCBI Refseq

selective_primer_finder

Finds candidate kmers with high variability between an inclusion and an exclusion group to design qPCR assays.

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

16S-SNAPP-py3

16S SNAPP on Python 3

16s-capture

Pipleine code for "Sensitive identification of bacterial DNA in clinical specimens by broad range 16S rRNA enrichment"

notepad--

一个支持windows/linux/mac的文本编辑器，目标是做**人自己的编辑器，来自**。

DEGEPRIME

A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies

variant-calling-pipeline

HPC based pipelines for variant calling using GATK

variant-calling-pipeline-gatk4

Variant Calling Pipeline Using GATK4 and Nextflow

namingGTDB

sourcetracker

bpipe

Bpipe - a tool for running and managing bioinformatics pipelines

rush

A cross-platform command-line tool for executing jobs in parallel

qiime

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

chroma.js

JavaScript library for all kinds of color manipulations