hsiaoyi0504

awesome-cheminformatics

A curated list of Cheminformatics libraries and software.

504GitExercise

Code to demonstrate simple use of github

BIOINF593_Final

blacksheepr

R package for outlier analysis

CancerSubtypes

If you are still interested in CancerSubtypes

COVID19-taiwan

Release COVID-19 FDA / NHI drugs screening results.

cptac

Python packaging for CPTAC data

docker-gromacs

Dockerfile for Gromcas (http://www.gromacs.org/)

docker-tutorial

dotfiles

my dot files (configurations for many tools)

Great_Lakes_SLURM

Using the Great Lakes cluster and batch computing with SLURM

GSEApy

Gene Set Enrichment Analysis in Python

hisat-genotype

hsiaoyi0504

hsiaoyi0504.github.io

My personal page (https://hsiaoyi0504.github.io/)

jieliu6.github.io

generated cv website

MatrixQCvis

MPalign

notes

This repo is for sharing my notes.

PANOPLY

Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)

PipeIT

Stand-alone Singularity Container for somatic variant calling on the Ion Torrent platform

pytorch_fnet

Three dimensional cross-modal image inference

rdkit

The official sources for the RDKit library

SI650_final

Blog: https://medium.com/@hsiaoyi/a-new-proteomics-dataset-search-engine-320d63aeb08e

singularity2docker

convert a singularity image back to Docker, full circle! #containerfriends

statsmodels

Statsmodels: statistical modeling and econometrics in Python

CircRNA_MS_ref_fasta

Create an MS reference fasta for circRNAs

EpiSCORE

Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles

FragPipe

A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data

SuPreMo

Pipeline for generating reference and perturbed sequences for input into predictive models.