Hector San Nicolas Fernandez's repositories
autoprimer3
A program to automatically generate primer designs to genes and genomic coordinates using primer3
bonito
A PyTorch Basecaller for Oxford Nanopore Reads
ccrhtml
A small repo for storing the code for making the files and html for CCRs.
cisregulatoryV
cis-regulatory region variant curation
ELIXIR-TrP-FAIR-training-handbook
Train-the-trainer handbook for making training materials FAIR
ExpansionHunter
A tool for estimating repeat sizes
figeno
Tool for plotting sequencing data along genomic coordinates.
GBSapp
Automated Pipeline for Variant/Haplotype Calling and Filtering
nanopack
An overview of all nanopack tools
NxTrim
Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
pauvre
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
REViewer
A tool for visualizing alignments of reads in regions containing tandem repeats
SQANTI3
Tool for the Quality Control of Long-Read Defined Transcriptomes
Patcher64Plus-Tool
Patcher64+ Tool
VoltRon
VoltRon: spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration