High Performance Open Bioinformatics Lab's repositories
viral-analysis
Workflows for viral analysis (as part of COVID-19 Biohackathon)
cookiecutter
A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.
ACAD18
Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop
alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
cheatsheets
RStudio Cheat Sheets
composer
Visual and code editor for Common Workflow Language
Cookbook
The Data Engineering Cookbook
cpp-cheatsheet
Modern C++ Cheatsheet
Data-Science--Cheat-Sheet
Cheat Sheets
data_compression_course
A crash course on Data Compression.
decifer
Copy-aware clustering of somatic single nucleotide variants by the descendant cell fraction
Deep-learning-for-clustering-in-bioinformatics
Deep Learning-based Clustering Approaches for Bioinformatics
deeplearning-biology
A list of deep learning implementations in biology
docker-alpine-bash
Docker image with Bash and complete utils (busybox replacements) (15MB)
ds4stats
Data science for statisticians workshop
FP16
Conversion to/from half-precision floating point formats
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
git-github-tutorial
A small repo to use for teaching basic git and github
hardware-effects
Demonstration of various hardware effects.
learning_bam_file
Learning the Sequence Alignment/Map format
miniwdl
A static analysis toolkit for the Workflow Description Language
sort-algos-c
Sort Algorithm General Implementations in C Language
starter-workflows
Accelerating new GitHub Actions workflows
tad
A desktop application for viewing and analyzing tabular data
Tidy-Bio-Specs
A collection of specifications for tidy and tidy-translatable genomics formats
tinyFA
A header-only C++ FASTA parser and indexer
tutorials
Short descriptions of important, useful skills in bioinformatics
wdl-runner
Easily run WDL workflows on GCP