Ruiyan Hou's repositories
Arginine-methylation-prediction-with-CTD-features
There are available data in arginine methylation prediction problem
blog
互联网是有记忆的，我想留下一些成长的脚印。
brie
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
docker-flask-image-recognition-sklearn
Dockerfile utilizing flask to host a scikit-learn image recognition model
Gaussian_Mixture_Models
This is the code for "Gaussian Mixture Models - The Math of Intelligence (Week 7)" By Siraj Raval on Youtube
GR
Genome Research template for LaTeX
hilearn
A small library of machine learning methods and data visualization plots
HLab-pubmon
Publication monitoring at Huang Lab
hou_basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
iFeature
iFeature is a comprehensive Python-based toolkit for generating various numerical feature representation schemes from protein or peptide sequences. iFeature is capable of calculating and extracting a wide spectrum of 18 major sequence encoding schemes that encompass 53 different types of feature descriptors. Furthermore, iFeature also integrates five kinds of frequently used feature clustering algorithms, four feature selection algorithms and three dimensionality reduction algorithms.
Intro-to-rnaseq-hpc-O2
This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
image-to-latex
Convert images of LaTex math equations into LaTex code.
MSscRNAseq2019
Analysis for 2019 submission "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis" Schafflick1, Xu, Hartlehnert1 et. al
Predicting-ABC-transporters
This repository includes raw data in "Predicting ATP-binding cassette transporters using the random forest method"
prosplign-intron-scorer
ProSplign intron scorer parses introns from ProSplign's alignment output and scores them based on local alignment quality.
pyseqlib
A small python library to process sequencing data.
pytorch
getmatrix
SAMap
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
sbms-server
School of Biomedical Sciences (HKU) server wiki repository
SCATS
A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
scMatch
scMatch: a single-cell gene expression profile annotation tool using reference datasets
scvelo
RNA Velocity generalized through dynamical modeling
scXpresso
Predicting cell population-specific gene expression levels
singleCellTK
Interactively Analyze scRNA-Seq Data
trackplot
Generate IGV style locus tracks from bigWig files in R
vireo
Demultiplexing pooled scRNA-seq data without genotype reference