Liping Hou's repositories
META_ANALYSIS
Tools for doing x way meta-analysis
AD_finemap
Code supporting analyses in paper on fine-mapping AD loci
atorus-sas-macros
Atorus clinical SAS Programming Macros
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
finemapping-pipeline
Statistical fine-mapping pipeline in FinnGen
fiveMinuteStats
A repo of short "vignettes" illustrating statistical concepts
FUMA-webapp
Source code of FUMA GWAS web application
gene_lists
List of gene lists for genomic analyses.
gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
imputation
A simulation study to compare different imputation pipeline for imputing family data
nimh_repro_wrkshpAug2017
Repository for the NIMH Workshop on Open and Reproducible Neuroscience on Aug 1 & 2, 2017
plotly_book
plotly for R book
PredictDB_Pipeline_GTEx_v7
PredictDB Pipeline for GTEx v7 data
progit2
Pro Git 2nd Edition
RASLseqTools
RASLseq FASTQ to RASLprobe counts.
STAARpipelineSummary
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
summary-gwas-imputation
harmonization, liftover, and imputation of summary statistics from GWAS
TwoSampleMR
R package for performing 2-sample MR using MR-Base database
ukb_phenotype_dashboard
A Shiny dashboard interface to explore UKBB phenotype data and phenotype mapping