Liping Hou (hou)

hou

Geek Repo

Company:NIMH

Location:Bethesda

Home Page:http://houlp.blogspot.com/

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Liping Hou's repositories

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NGS

Several NGS tools I have developed

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TSVA

A toolkit for tissue specific variant effect prediction

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META_ANALYSIS

Tools for doing x way meta-analysis

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AD_finemap

Code supporting analyses in paper on fine-mapping AD loci

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atorus-sas-macros

Atorus clinical SAS Programming Macros

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bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

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finemapping-pipeline

Statistical fine-mapping pipeline in FinnGen

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fiveMinuteStats

A repo of short "vignettes" illustrating statistical concepts

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FUMA-webapp

Source code of FUMA GWAS web application

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gene_lists

List of gene lists for genomic analyses.

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gtex-pipeline

GTEx & TOPMed data production and analysis pipelines

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imputation

A simulation study to compare different imputation pipeline for imputing family data

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nimh_repro_wrkshpAug2017

Repository for the NIMH Workshop on Open and Reproducible Neuroscience on Aug 1 & 2, 2017

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plotly_book

plotly for R book

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PredictDB_Pipeline_GTEx_v7

PredictDB Pipeline for GTEx v7 data

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progit2

Pro Git 2nd Edition

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RASLseqTools

RASLseq FASTQ to RASLprobe counts.

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samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

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STAARpipelineSummary

An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline

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summary-gwas-imputation

harmonization, liftover, and imputation of summary statistics from GWAS

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TwoSampleMR

R package for performing 2-sample MR using MR-Base database

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ukb_phenotype_dashboard

A Shiny dashboard interface to explore UKBB phenotype data and phenotype mapping

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workshops

IQSS RTC workshop materials

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