horothesun / metagenomics-pipeline-stage-template

Cookiecutter template for a metagenomics pipeline's stage with GitHub Actions CI.

Metagenomics pipeline - Stage template

Requirements

• Cookiecutter (install)

Usage

cd <main project folder>
cookiecutter https://github.com/horothesun/metagenomics-pipeline-stage-template
cd <stage folder>
cat __REMOVE__How-to-integrate-the-stage.md

and follow the steps to integrate it with your project.