hongqin

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Old Dominion University

U.S.A.

https://www.youtube.com/c/hongqin

Hong Qin's starred repositories

models

Models and examples built with TensorFlow

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awesome-deep-learning-papers

The most cited deep learning papers

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handson-ml

⛔️ DEPRECATED – See https://github.com/ageron/handson-ml3 instead.

Language:Jupyter NotebookApache-2.025160 1087 562

CapsNet-Tensorflow

A Tensorflow implementation of CapsNet(Capsules Net) in paper Dynamic Routing Between Capsules

Language:PythonApache-2.03800 249 66

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Language:PythonBSD-3-Clause3166 158 817

tensorflow-without-a-phd

A crash course in six episodes for software developers who want to become machine learning practitioners.

Language:Jupyter NotebookApache-2.02778 148 42

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

Language:Python604 59 79

opentrons

Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2

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cnn-models

ImageNet pre-trained models with batch normalization for the Caffe framework

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Rcrawler

An R web crawler and scraper

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scholar

Analyse citation data from Google Scholar

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resist_oped

🕵🏽‍♀️ Identifying the author behind New York Time’s op-ed from inside the Trump White House.

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keras-segnet

SegNet model implemented using keras framework

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tidyversity

🎓 Tidy tools for academics

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DCell

DCell browser and gene deletion simulator

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goenrich

GO enrichment with python -- pandas meets networkx

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scMCA

Mouse cell atlas

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courses

:books: Files for online courses

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genomics-workshop

Genomics Workshop Overview

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Microbiome-Analysis-Using-R

Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.

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FogBank

Single Cell Segmentation

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egpmrp

Efficient Gaussian-Process-Modulated Renewal Processes

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udap.github.io

UDAP Foundation website

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AGAPE

AGAPE (Automated Genome Analysis PipelinE) for yeast pan-genome analysis

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humanbase-docs

A template Sphinx repo

2 20

Plant-Digitization-Project

Plant Digitization Project -- Python Tkintering

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MD

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aging_ml

Prediction and characterization of human ageing-related proteins by using machine learning. Related publication: https://doi.org/10.1038/s41598-018-22240-w

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scholar

Analyse citation data from Google Scholar

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simcenter_clusters_excises

training excises for using simcenter clusters

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