Hongduo Sun's repositories
gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns etc from GTF files
BrCa_cell_atlas
Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
CITEseq_MM_CoV_Vac
This repository features the analysis code for the manuscript "2023 Enssle JC et al., Cytokine-responsive T- and NK-cells portray SARS-CoV-2 vaccine-responders and infection in multiple myeloma patients".
DNBelab_C_Series_HT_scRNA-analysis-software
An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
enhancers
Localization of transcribed enhancers and quntification of their usage from the initiation sites of bidirectionally transcribed loci
scPLC
Codes for the scPLC project
Eosinophils_scRNASeq
Codes for analyses in the titled "Active eosinophils regulate host defense and immune responses during intestinal inflammation"
luca
Single-cell Lung Cancer Atlas with 1.2M cells