holtgrewe

mason3

Mason read simulator version 3 (with 100% more emojis and Rust)

holtgrewe.github.io

Full-stack Bioinformatics (my blog - I'm so 00s')

bioconda-recipes

Conda recipes for the bioconda channel.

dotfiles

hgvs

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

alertmanager

Prometheus Alertmanager

biocommons.seqrepo

non-redundant, compressed, journalled, file-based storage for biological sequences

CADA

cdot

Transcript versions for HGVS libraries

checkmk

Checkmk - Best-in-class infrastructure & application monitoring

dash-dwd

drf-pydantic

Use pydantic with the Django REST framework

haplotype-lso

Haplotyping of C. Liberibacter solanacearum from Sanger data

holtgrewe

Profile README

hpo

Rust library for the Human Phenotype Ontology

inline-html

Python script for inlining CSS stylesheets and conversion of resources to data-uri

kayobe-config

Configuration files for kayobe. Mirror of code maintained at opendev.org.

manuelholtgrewe.de

mwp-rust-rocksdb-cache

noodles

Bioinformatics I/O libraries in Rust

pb-human-wgs-workflow-snakemake

Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads

rust-rocksdb

rust wrapper for rocksdb

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-profiles-slurm

Cookiecutter for snakemake slurm profile

snapshottest

Snapshot Testing utils for Python 📸

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

tensorflow-feedstock

A conda-smithy repository for tensorflow.

uta

Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

vuetify3-vue3-test

Example of using vue3/vuetify3 with unit tests

wthr-server

Weather data sink and dashboard (Flask+Plotly Dash)