holmrenser

kallistobustools

kallisto | bustools workflow for pre-processing single-cell RNA-seq data

calculate-flops.pytorch

The calflops is designed to calculate FLOPs、MACs and Parameters in all various neural networks, such as Linear、 CNN、 RNN、 GCN、Transformer(Bert、LlaMA etc Large Language Model)

git-workshop

Repository for the BIF GIT workshop

AFDB90v4

GeometricKernels

Geometric kernels on manifolds, meshes and graphs

kallisto

Near-optimal RNA-Seq quantification

picea

lightweight python library for working with trees and sequence collections

fetchngs

Pipeline to fetch metadata and raw FastQ files from public databases

GPJax

Gaussian processes in JAX.

CAFE5

Version 5 of the CAFE phylogenetics software

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

pandoc-pdf-template

A basic template to make Pandoc-generated PDFs look better.

stat_rethinking_2022

Statistical Rethinking course winter 2022

pikachu

Python-based Informatics Kit for Analysing Chemical Units

scanpy

Single-cell analysis in Python. Scales to >1M cells.

ProtHint

Protein hint generation pipeline for gene finding in eukaryotic genomes

fastobo-py

Faultless AST for Open Biomedical Ontologies in Python.

portein

2D portraits of 3D protein structures

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

Augustus

Genome annotation with AUGUSTUS

gooseberry

A command line utility to generate a knowledge base from Hypothesis annotations

cogent3

Comparative Genomics Toolkit 3

cargo-aoc

geometricus

A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.

caretta

A software-suite to perform multiple protein structure alignment and structure feature extraction.

SO-Ontologies

Collect of SO Ontologies

bat

A cat(1) clone with wings.

the-way

A code snippets manager for your terminal.

pyro

Deep universal probabilistic programming with Python and PyTorch

esdoc2-plugins