holmrenser

IOGA

Iterative Organellar Genome Assembly

picea

lightweight python library for working with trees and sequence collections

parasponia_code

deep_learning

taxus

Gaussian Process models for transcriptome data

AoC2018

Advent of Code 2018

AoC2019

Advent of Code 2019 solutions

AoC2020

Advent of Code 2020

art_gen

biosb_metagenomics_notebooks

jupyter notebooks for biosb metagenomics course

blastserver

commander.js

node.js command-line interfaces made easy

distrax

documentation

:book: documentation for modern JavaScript

esdoc2-plugins

genenotebook

A collaborative notebook for genes and genomes

genometools

GenomeTools genome analysis system.

GPcounts

GPJax

A didactic Gaussian process package for researchers in Jax.

gpytorch

A highly efficient and modular implementation of Gaussian Processes in PyTorch

jupyterhub_conda_docker

lzw_kernel

MCScanX

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

nitrate_cytokinin_nodulation

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pantools

PanTools

pyro

Deep universal probabilistic programming with Python and PyTorch

readline-promise-repro

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

transcriptional_networks_nodulation

Code and supplementary data for transcriptional networks thesis chapter