Beast code in Giters

hoffmangroup's repositories

pdfcomments

Language:Python128 5 8

umap

Language:Python22 4 15

acidbio

Language:Python14 1 2

segway

Application for semi-automated genomic annotation.

Language:ShellGPL-2.013 4 156

polyidus

Polyidus provides a framework to catch chimeric DNA sequences with a tale of python

Language:PythonGPL-3.08 5 12

mccf1

Language:R4 20

virchip

Language:PythonGPL-3.04 3 1

peako

Software for finding transcription factor binding motifs using knockout controls, in CUT&RUN data.

Language:PythonNOASSERTION3 3 2

allmytexs

Language:ShellGPL-3.02 20

genomedata

The Genomedata format for storing large-scale functional genomics data.

Language:CGPL-2.02 3 58

segzoo

Language:PythonGPL-2.02 30

dnamod

Language:HTMLGPL-2.01 3 5

segway-mailing-list-archives

Archive of the Segway University of Washington mailing list

1 40

2020behst

Language:Jupyter Notebook020

2020spikein

All code pertaining to the "Sensitive and reproducible cell-free methylome quantification with synthetic spike-in controls" manuscript

Language:HTML040

2021_hESC_3D_Genome

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2022modTFBSs

Public repository of additional scripts used in our expanded alphabet manuscript.

Language:PythonGPL-3.0030

BEHST

Language:ShellGPL-2.0020

BEHST-2022

Language:ShellGPL-2.0000

cla

Tools for Cell Lineage Analysis

Language:PythonBSD-3-Clause000

claweb

Language:PythonMIT010

cytomod

Language:PythonGPL-3.0000

genomedata-mailing-list-archive

Archive of the Genomedata University of Washington mailing list

030

nour

Lab notebook for my Fall 2023 rotation in the Hoffman Lab

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pdfuris

Language:Python020

segtools

Package for analysis of genomic segmentations.

Language:PythonGPL-2.003 62

semi-supervised-segway-workflow

Snakemake workflow to reproduce the results from "Semi-supervised segmentation and genome annotation".

Language:PythonNOASSERTION030

sequencing-resolution-analysis

Language:HTML020

skrrf

Language:CythonBSD-3-Clause010

vcall

Language:Python020