hobrien

Perl

Bee_space

Scripts to plot spec data in bee colour space

CurriculumVitae

Heath O'Brien CV

GENEX-FB2

LabNotes

GENEX-FB1

GENEX-FB3

PhotobiontDiversity

Data and scripts for PhotobiontDiversity.wordpress.com

RNAseqTools

Descriptions and Benchmarks for RNAseq tools

cDNA_Cupcake

Miscellaneous collection of Python and R scripts for processing sequencing data

DiezmannLab

R code and data sets generated as part of the lab's work on Hsp90's role in fungal virulence and biology

DiezmannLabManduca

Tobacco Hornworm as a novel host model for the study of fungal virulence and drug efficacy

ea-utils

Automatically exported from code.google.com/p/ea-utils

flex

A framework (comand line tool + libraries) for creating flexible compute pipelines

GrowthGrids

A simple Shiny app to plot growth curve data from plate readers

hobrien

Config files for my GitHub profile.

hobrien.github.io

LongCovidTools

Tools to prepare or QC genetic data for cohorts in the Long Covid HGI

Microglia-

nextflow-tutorial

Nextflow training material for introductory tutorial

Peltigera_ITS

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

Python

R

R_ scripts

RNotes_blogdown

jen richmond blog

SARTools

Statistical Analysis of RNA-Seq Tools

Selaginella_DGE

Differential Gene Expression Analyses on Selaginella

ShoppingList

tophat-recondition

Post-processor for TopHat unmapped.bam files making them useable by downstream software.

WASP

WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery