hoangthienan95

godot

Godot Engine – Multi-platform 2D and 3D game engine

immich

High performance self-hosted photo and video management solution.

marimo

A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

giskard

🐢 Open-Source Evaluation & Testing for LLMs and ML models

vizro

Vizro is a toolkit for creating modular data visualization applications.

ManimML

ManimML is a project focused on providing animations and visualizations of common machine learning concepts with the Manim Community Library.

consistencydecoder

Consistency Distilled Diff VAE

skrub

Prepping tables for machine learning

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

pytimetk

Time series easier, faster, more fun. Pytimetk.

context

A CLI tool & API over the top 1221 Python libraries.

ULTRA

A foundation model for knowledge graph reasoning

BI-BE-CS-183-2023

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

awesome-ml-demos

Curated list of interactive ML demos

open_lm

A repository for research on medium sized language models.

SaProt

Saprot: Protein Language Model with Structural Alphabet

libgen_to_txt

Convert all of libgen to high quality markdown

ppi_py

A package for statistically rigorous scientific discovery using machine learning. Implements prediction-powered inference.

decoupler-py

Python package to perform enrichment analysis from omics data.

EvalNE

Source code for EvalNE, a Python library for evaluating Network Embedding methods.

bcb731

Defense Against the Dark Arts

conformalized-gnn

Uncertainty Quantification over Graph with Conformalized Graph Neural Networks (NeurIPS 2023)

GraphMaker

code for the paper "GraphMaker: Can Diffusion Models Generate Large Attributed Graphs?"

Cfold

Structure prediction of alternative protein conformations

absplice

GraphText

allo

Allo: a multi-mapped read rescue strategy for gene regulatory analyses

variantplot

To create figures showing different protein variants, mutants etc

EMMA

an ensemble usage of MAFFT-linsi --add on large datasets

PeakPredict

Peak overlaps and feature predictions