hkucukdereli

flir-thermal

Python wrappers to read seq files from flir thermal cameras. These functions require FLIR sciene file SDK.

ViRMEn

This is a fork of ViRMEn by Dmitriy Aronov from David Tank lab at Princeton. This repo is only for Andermann lab implementation of ViRMEn. For the original code and documentation visit https://pni.princeton.edu/pni-software-tools/virmen

Analysis_Miniscope

avoid

Arduino sketch for active avoidance paradigm. Easy integration with Andermann lab core behavior rigs.

behavior

boxplotter

CalBlitz

Blazing fast calcium imaging analysis toolbox

ClearMap

ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.

code

pyPhotometry code, GUI and micropython firmware

cv

My automatically-generated academic CV

cv2

DeepLabCut

Markerless tracking of user-defined features with deep learning

DeepSlice

A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

designs_to_cut

designs for laser cuts

digitalWriteFast

Arduino library for faster digitalWrite using port manipulation and macro for ease in pin assignments.

eegcellent

Kucukdereli_etal_2024

labsync

Synchronizing data between servers

lickOmeter

M-Track

M-Track: A new software for automated detection of forepaw trajectories in mice

matplotlib

matplotlib: plotting with Python

Miniscope_DAQ_PCB

Design, fabrication, and assembly files for the Miniscope DAQ PCB

MousyBox

nest-simulator

The NEST simulator

pipe

Twophoton pipeline

running_encoder

virtually

Code to analyze VR RTPP behavior. This code has been kicking around for some time now. Written and optimized for a very specific purpose in mind. Use it at your own peril.

vrboxdesigns