Jie Huang's starred repositories
swirl_courses
:mortar_board: A collection of interactive courses for the swirl R package.
BeamerStyleSlides
🌈Beamer风格的幻灯片模板集。包含了PowerPoint和Keynote两套格式。
scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
tabula-muris-senis
Tabula Muris Senis
synthwave85
A 80s style theme for RStudio v1.2+
Protocols-4pub
Multi-omics analysis protocols by Lyu.
T-cell-effectorness
Codes used for all the data analysis steps in the paper "Single-cell transcriptomics identifies an effectorness gradient shaping the response of CD4+ T cells to cytokines"
Best-Labs-of-3D-Genome
Data and the co-authored network I extracted for lab selection in 3D genome research field
AQuA-HiChIP
Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.
Efficient-RNA-polymerase-II-pause-release-requires-U2-snRNP-function_2021
Caizzi, Monteiro-Martins (2021)
2018__lncRNA_promoter_MPRA
analysis for the paper "high-throughput analysis of lncRNA core promoters elucidates rules governing tissue specificity"
ReplexChIPQC
ReplexChIPQC is a pair of R scripts and an R markdown replicating and extending the functionality of the R package ChIPQC. Featuring highly customizable reports for any size experiment, elimination of redundant sample re-processing, parameterized command line interface for reusability without code changes, and more.
cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
mergePeaks_resolve
Multi-threaded C++ parser to convert registered ChIP-SEQ peak IDs (HOMER) to table of average peak intensities
bein-chipseq-tutorial
A toy example for teaching Bein
XPRESSpipe
An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data