Yusuke Takahashi's repositories
bedtools2
A fork of bedtools mainly for branch: https://github.com/hisakatha/bedtools2/tree/makewindows-initial-window
collect-regional-kinetics
Collect kinetics info at specified regions from PacBio ipdSummary results
coolpuppy
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
exp2superscript
This script converts exponents in Excel cells into superscripts
GitHubTraining
This is a test repository for GitHub training.
hicrep
Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
HiddenMarkovModel
Hidden Markov Model for training
homebrew-core
:beers::penguin: Core formulae for the Linuxbrew package manager
homebrew-core-hb
🍻 Default formulae for the missing package manager for macOS
klab
Kasahara lab. public repository.
mirnylib-legacy
A legacy repository. Useful functionality was ported to cooltools.lib.numutils.
mouse-h3kd-analysis
Scripts for mouse histone H3 knockdown analysis
snhic-dequeker
Modification to the codes from https://doi.org/10.5281/zenodo.5906351