hiruna72

squigualiser

Visualise and analyse nanopore (ONT) raw signals

slow5-dorado

A LibTorch Basecaller for Oxford Nanopore Reads

artic_c

C/C++ implementation of ARTIC bioinformatics platform for nanopore sequencing of nCoV2019 novel coronavirus

f5n

Genopo a.k.a. F5N - a portable DNA analysis toolkit for nanopore data https://nanoporetech.com

f5n_server

This is a job server to distribute sequencing tasks and keep track of clients

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bioawk

BWK now can write output to files and can be built using CMake

bioconda-recipes

Conda recipes for the bioconda channel.

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

cepdnaclk.github.io

ds1018

ML - credit card information

f5c

Attempt for a faster implementation of Nanopolish call-methylation in C

faq

Frequently Asked Questions

fieldbioinformatics

The ARTIC field bioinformatics pipeline

genopo

product details

hiruna72.github.io

libbthread

bionic library that provide some missing posix threading function

llvm-project

The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. Note: the repository does not accept github pull requests at this moment. Please submit your patches at http://reviews.llvm.org.

minimap2-arm

A versatile pairwise aligner for genomic and spliced nucleotide sequences

nanopolish

Signal-level algorithms for MinION data

ont_h5_validator

poregen

Collect raw signal event samples for kmers from an event alignment file

ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

project_blue_crab

pod5 to slow5 conversion

seq

A high-performance, Pythonic language for bioinformatics

sigmap

A streaming method for mapping nanopore raw signals

slow5_compression_techniques

try different compression techniques for slow5 format

slow5tools

UNCALLED

Raw nanopore signal mapper that enables real-time targeted sequencing

USB-Interface