hirokai / FijiScriptingTools

Common images processing tasks on Fiji Python scripting environment.

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Fiji Python scripting utility functions

Common tasks such as

  • Loading multiple files as a stack
  • Cropping
  • Removing a part of stacks
  • Splitting channels
  • Changing LUT of image
  • Line scan
  • Measure in ROIs.
  • Reading/writing CSV/TSV files.
  • etc.

in a consistent and easy-to-use manner.

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Common images processing tasks on Fiji Python scripting environment.


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