hiranumn

IntegratedGradients

Python/Keras implementation of integrated gradients presented in "Axiomatic Attribution for Deep Networks" for explaining any model defined in Keras framework.

DeepAccNet

Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.

DeepATACseq

Repository for the code for DeepATAC project presented at WCB workshop in ICML2017

IntegratedGradientsTF

Tensorflow implementation of integrated gradients presented in "Axiomatic Attribution for Deep Networks". It explains connections between two tensors.

DLmodels

Personal experiments and implementation examples of deep learning papers.

DeepAccNet-TF

Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)

ATAC_peak

Deep learning framework to predict TF binding from DNA-sequence and ATAC-seq signals.

LocalAccuracyPredictor

Tensorflow/Python implementation of local accuracy predictor for proteins

BackpropDemonstration

Demonstration of back-propagation for the undergrad ML class that I TAed [Archived]

jlVCF

A simple VCF file parser for Julia 3.0

PyProtein

An easy interface to extract data from pdbs using the rosetta framework

AminoAcids2BackboneAngles

Sample deep-learning notebooks for presentation given at BakerLab @ UW

BackboneEstimator.py

Estimates backbone quality based on C beta (or C alpha) distance maps.

ChipSeqUtil.jl

Utility files for analyzing ChIP-Seq data.

GraphConv

Implementation of graph convolution layers

jlBAM

A simple bam file reader for Julia 5.0

3D-IWGAN

A repository for the paper "Improved Adversarial Systems for 3D Object Generation and Reconstruction".

DeepAccNet-MSA

EE595project

Class project for EE595. Predicting TF binding events with deep-learning

GZip.jl

A Julia interface for gzip functions in zlib

Leukemia_multinomial_classification

[09/01/2014~12/15/2014] The goal of this project is to classify the gene expression data of leukemia patients into multiple subtypes.

METADATA.jl

Metadata for registered Julia packages.

Neat_PredPrey_VisualStudio_ver

My undergrad research project. See https://bitbucket.org/hiranumn/neatxcode_2 for the original repo

Neat_PredPrey_XCode_ver

My undergrad research project. Github copy of https://bitbucket.org/hiranumn/neatxcode.

Phylogenetic_comps

phylogenetic comps repository (originally from my assembla)

PixelCNN

PureSeq.jl

Code for the Pure-seq project