Hiroaki Imoto's repositories
ode_solver
Introduction to Numerical Methods / Ordinary Differential Equations
3d-surface-plot
Three-Dimensional Plotting in Matplotlib
bifurcation
Numerical Bifurcation & Stability Analysis of ODE Models
ParamEstim
Parameter Estimation of ODE/DDE Models in Julia
ALRA
Imputation method for scRNA-seq based on low-rank approximation
bionetgen
Rule-based modeling framework
colorbar
This example shows how to build colorbars without an attached mappable.
GENIE3
Machine learning-based approach for the inference of gene regulatory networks from expression data.
GillesPy2
Modeling toolkit for biochemical simulation
pyDOE3
Design of experiments for Python
rosa_webinar_20Jan2021
Code for Rosa Webinar on Building kinetic models with complex drug-protein interactions
Sevrin_CellRep_2024
Cell-specific models reveal conformation-specific RAF inhibitor combinations that synergistically inhibit ERK signaling in pancreatic cancer cells