himelmallick

Tweedieverse

Differential analysis of multi-omics data based on the Tweedie distribution

IntegratedLearner

Integrated Machine Learning for Multi-omics Classification and Prediction

BayesRecipe

Bayesian Reciprocal Regularization

AMAZonn

A Multicollinearity-adjusted Adaptive LASSO for Zero-inflated Count Regression

BenchmarkMicrobiome

Large-scale Benchmarking of Microbial Multivariable Association Methods

Gooogle

Group Regularization for Zero-inflated Count Regression Models

TweedieLabs

Collection of walkthrough tutorials on how to use Tweedieverse for differential analysis of omics data.

Bayes_Review_ASA_BIOP

This repository houses all the analysis codes described in the Bayesian nonclinical review paper published in Communications in Statistics – Case Studies and Data Analysis.

bsmTutorial

This repository houses the analysis codes from the Bayesian preclinical tutorial paper led by the DIA/ASA-BIOP Nonclinical Bayesian Working Group members.

BayesMultiview

The repository houses the analysis and simulation codes from the Bayesian multiview project.

BenchmarkSingleCell

Large-scale Benchmarking of Single-cell Differential Expression Analysis Methods

himelmallick.github.io

Source files for the Hugo personal webpage generator

Tweedie_SingleCell

Analysis codes from the Tweedie single-cell paper.

UBR

Unified Bayesian Regularization via Scale Mixture of Uniform Distributions

awesome_datascience_travel_grants

A curated list of early career data science student paper awards and travel grants.

BenchmarkSVG

Coracle

This repository houses the R codes for conformal inference in multi-omics intergration and multiview analysis.

DAssemble

Ensemble models for differential analysis

himelmallick

HM

An R package with Himel Mallick's personal R code

MAZIC

The repository houses the R codes related to the project 'Marginalized Zero-inflated Count Regression'.

Mimesys

Simulation engine to generate synthetic multi-omics datasets with arbitrary association structure

omicsUtils

This repository houses preprocessing scripts to enable efficient downstream analysis of omics data.

TweedSpot

Tweedie Spatial Omics Analysis Toolbox