Wilson Adams's repositories
Fluorescence-Flatfield-Correction
ImageJ macro for automated flat-field correction for fluorescence microscopy images and stacks. Effectively a high-pass spatial filter that works better for abnormal backgrounds.
WRA_FIJIStartupTools
These tools load into the FIJI GUI on startup. Feel free to take and modify to your likings.
FIJI-ImageJ-WRA-LUTs
A collection of custom look-up tables (false color maps) for FIJI/ImageJ. Also found in the NeurocytoLUTs update site.
FIJI-Stack-Normalizer
This is a FIJI/ImageJ script used to normalize a timeseries image stack (for visualization purposes) to the stack average between a designated range of frames. Divergent LUTs are recommended for visualization (ICA, ICA2, ICA3, OrangeLowCyanHigh, PurpleLowGreenHigh, etc)
VBC-FIJI-StartupMacro
The startup macro for the Vanderbilt Biophotonics Center FIJI update site. It provides a GUI of shortcuts to some useful but buried FIJI commands to speed up exploratory image analysis. Replace your 'StartupMacro.ijm' file in your FIJI macro's folder with the script in this repository and you should be good to go.
FIJI_ColorblindCheck
Two scripts to let you check the colorblind-friendliness of your figures/images.
list-of-update-sites
The update sites ImageJ knows about automatically
placefig-matlab-script
Sick of resizing all of your figures in matlab when you run your scripts? Placefig() streamlines this hassle and saves you valuable to do what you do best, writing the stupid code.