An R package designed to link metabolites IDs from different Metabolome databases with eachother in a step to resolve ambiguity and standardize metabolites representation and annotation. Currently the package supports resolving IDs for the following databases:
- Human Metabolome Database (HMDB)
- Chemical Entities of Biological Interest (ChEBI)
- PubChem
- Kyoto Encyclopedia of Genes and Genomes (KEGG)
- Lipidomics Gateway (LipidMaps)
For any questions or issues please use the Issues in github or contact Rajmund Casombordi or Sara Younes.
Please note that I updated the installation because it is dependent on one of the packages so this is how to install the package
library(devtools) install_github("shizidushu/hfun","komorowskilab/metafetcher")
MetaFetcheR is implemented in R
library(devtools)
install_github("shizidushu/hfun","komorowskilab/metafetcher")See the documentation.
- Rajmund Casombordi @oboforty
- Sara Yones sara.younes@icm.uu.se @SaraYones
- Klev Diamanti @klevdiamanti