Florian Heyl's repositories
atom-language-nextflow
Nextflow syntax highlighter for Atom editor
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bioconda-recipes
Conda recipes for the bioconda channel.
cellranger
Nextflow pipeline wrapper for executing Cell Ranger
container-galaxy-sc-tertiary
Galaxy container for single cell RNA-Seq tertiary analysis tools
galaxy
Data intensive science for everyone.
galaxytools
:microscope::books: Galaxy Tool wrappers
github-slideshow
A robot powered training repository :robot:
gruffi
Granular Functional Filtering (Gruffi) to isolate stressed cells
mcmicro
Multiple-choice microscopy pipeline
mcmicro_QC
Module to prepare QC output from MCMICRO for MultiQC.
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
SalamiSnake
Snakemake Piepline for CLIP data
scanpy-scripts
Scripts for using scanpy
scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
Seurat.utils
Various utility functions for Seurat single-cell analysis
StreetScienceCommunity.github.io
Bring science to the "street"
test-datasets
Test data to be used for automated testing with the nf-core pipelines
tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
training-material
A collection of Galaxy-related training material
usegalaxy-eu-tools
List of tools included in https://usegalaxy.eu
website-1
Website hosted at https://openproblems.bio
website_nextflow
Code and files for the main nf-core website.