Helen Eisenach's starred repositories

AlphaFold3

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

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Re-Glyco

The Python software re-glycosylates protein structures using MD simulation results from the glycoshape database. It takes alphafold protein structures as input and outputs modified structures with glycans added at appropriate sites.

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RFdiffusion

Code for running RFdiffusion

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biopython

Official git repository for Biopython (originally converted from CVS)

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pycoevol

A Python workflow to study protein-protein coevolution and interaction

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